Pan-genome Analysis and Exploration

panX logo

Richard Neher, Wei Ding, and I created a pipeline to automatically analyze pan-genomes. The most outstanding part of this project is the phylogeny-based identification of paralogs and the visualization of the pan-genome in a browser. It is now very easy to explore the pangenome and search for certain genes or features within a pan-genome.

Have a look at what we have done at  this demo webpage.